primarycensored_ode.stan File Reference

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Functions
real	dist_lcdf (real delay, array[] real params, int dist_id)
real	primary_lpdf (real x, int primary_id, array[] real params, real min, real max)
vector	primarycensored_ode (real t, vector y, array[] real theta, array[] real x_r, array[] int x_i)

Function Documentation

dist_lcdf()

real dist_lcdf	(	real	delay,
		array[]real	params,
		int	dist_id )

Compute the log CDF of the delay distribution

Parameters

delay	Time delay
params	Distribution parameters
dist_id	Distribution identifier 1: Lognormal, 2: Gamma, 3: Normal, 4: Exponential, 5: Weibull, 6: Beta, 7: Cauchy, 8: Chi-square, 9: Inverse Chi-square, 10: Double Exponential, 11: Inverse Gamma, 12: Logistic, 13: Pareto, 14: Scaled Inverse Chi-square, 15: Student's t, 16: Uniform, 17: von Mises

Returns

Log CDF of the delay distribution

// Example: Lognormal distribution
real delay = 5.0;
array[2] real params = {0.0, 1.0}; // mean and standard deviation on log scale
int dist_id = 1; // Lognormal
real log_cdf = dist_lcdf(delay, params, dist_id);

Definition at line 23 of file primarycensored_ode.stan.

primary_lpdf()

real primary_lpdf	(	real	x,
		int	primary_id,
		array[]real	params,
		real	min,
		real	max )

Compute the log PDF of the primary distribution

Parameters

x	Value
primary_id	Primary distribution identifier
params	Distribution parameters
min	Minimum value
max	Maximum value

Returns

Log PDF of the primary distribution

// Example: Uniform distribution
real x = 0.5;
int primary_id = 1; // Uniform
array[0] real params = {}; // No additional parameters for uniform
real min = 0;
real max = 1;
real log_pdf = primary_lpdf(x, primary_id, params, min, max);

Definition at line 68 of file primarycensored_ode.stan.

primarycensored_ode()

vector primarycensored_ode	(	real	t,
		vector	y,
		array[]real	theta,
		array[]real	x_r,
		array[]int	x_i )

ODE system for the primary censored distribution

Parameters

t	Time
y	State variables
theta	Parameters
x_r	Real data
x_i	Integer data

Returns

Derivatives of the state variables

Definition at line 87 of file primarycensored_ode.stan.