primarycensored_ode.stan File Reference

Functions in this File
real	gengamma_lcdf (real y, real shape, real scale, real k)
int	dist_has_positive_support (data int dist_id)
int	lognormal_lcdf_underflows (real y, real mu, real sigma)
real	dist_lcdf (real delay, array[] real params, int dist_id)
real	primary_lcdf (real p, int primary_id, array[] real primary_params, data real pwindow)
real	primary_lpdf (real x, int primary_id, array[] real params, real xmin, real xmax)
vector	primarycensored_ode (real t, vector y, array[] real theta, array[] real x_r, array[] int x_i)

Function Documentation

primary_lcdf()

real primary_lcdf	(	real	p,
		int	primary_id,
		array[]real	primary_params,
		data real	pwindow )

Log CDF of the primary distribution on [0, pwindow]

Returns log F_primary(p) for the primary event time p in [0, pwindow]. Only primary_id values supported by check_for_analytical should be passed here. The Stan _lcdf convention requires the | syntax at call sites.

Parameters

p	Primary event time in [0, pwindow]
primary_id	Primary distribution identifier (1=uniform, 2=expgrowth)
primary_params	Distribution parameters (empty for uniform; [r] for expgrowth)
pwindow	Primary event window width

Returns

log(F_primary(p))

Definition at line 176 of file primarycensored_ode.stan.

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